Chess2FLYA

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Chemical shift statistics to FLYA


Chess2FLYA is a C++ program that uses RNA secondary structure information in the connectivity table format (.ct file format) and a built-in chemical shift statistics file to generate input files for the FLYA automated resonance assignment algorithm implemented in the program package CYANA. The input files

  • CYANA sequence file (.seq) with the RNA sequence
  • XEASY chemical shift list (.prot) with the mean values and standard deviations from 1D shift statistics statistics
  • CYANA torsion angle restraint file (.aco) that restricts the backbone of regular A-form RNA
  • CYANA macro file indicating the ranges of nucleotides involved in regular Watson-Crick base-pairs.

Availability

Documentation

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