Chess2FLYA
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* [[Media:CofimaManual.pdf|Manual (PDF)]] | * [[Media:CofimaManual.pdf|Manual (PDF)]] | ||
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| + | == References == | ||
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| + | * Aeschbacher, T., Schmidt, E., Blatter, M., Maris, C., Duss, O., Allain, F. H.-T., Güntert, P. & Schubert, M. Automated and assisted RNA resonance assignment using NMR chemical shift statistics. Nucl. Acids Res., submitted. | ||
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| + | [http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Aeschbacher13.pdf .] [http://dx.doi.org/10.1006/jmre.1998.1570 J. Magn. Reson.135, 288-297 (1998)] | ||
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Revision as of 09:43, 17 May 2013
Chemical shift statistics to FLYA
Chess2FLYA is a C++ program that uses RNA secondary structure information in the connectivity table format (.ct file format) and a built-in chemical shift statistics file to generate input files for the FLYA automated resonance assignment algorithm implemented in the program package CYANA. The input files
- CYANA sequence file (.seq) with the RNA sequence
- XEASY chemical shift list (.prot) with the mean values and standard deviations from 1D shift statistics statistics
- CYANA torsion angle restraint file (.aco) that restricts the backbone of regular A-form RNA
- CYANA macro file indicating the ranges of nucleotides involved in regular Watson-Crick base-pairs.
Availability
- Chess2FLYA is freely available from the group of Prof. F. H. Allain at ETH Zürich. The current version is Chess2FLYA 1.0.
Documentation
References
- Aeschbacher, T., Schmidt, E., Blatter, M., Maris, C., Duss, O., Allain, F. H.-T., Güntert, P. & Schubert, M. Automated and assisted RNA resonance assignment using NMR chemical shift statistics. Nucl. Acids Res., submitted.
