Chess2FLYA
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| − | Chess2FLYA is a C++ program that uses RNA secondary structure information in the connectivity table format (.ct file format) and a built-in chemical shift statistics file to generate input files for the [[FLYA]] automated resonance assignment algorithm implemented in the program package [ | + | Chess2FLYA is a C++ program that uses RNA secondary structure information in the connectivity table format (.ct file format) and a built-in chemical shift statistics file to generate input files for the [[FLYA]] automated resonance assignment algorithm implemented in the program package [http://www.cyana.org/wiki CYANA]. The input files |
* CYANA sequence file (.seq) with the RNA sequence | * CYANA sequence file (.seq) with the RNA sequence | ||
Revision as of 09:10, 17 May 2013
Chemical shift statistics to FLYA
Chess2FLYA is a C++ program that uses RNA secondary structure information in the connectivity table format (.ct file format) and a built-in chemical shift statistics file to generate input files for the FLYA automated resonance assignment algorithm implemented in the program package CYANA. The input files
- CYANA sequence file (.seq) with the RNA sequence
- XEASY chemical shift list (.prot) with the mean values and standard deviations from 1D shift statistics statistics
- CYANA torsion angle restraint file (.aco) that restricts the backbone of regular A-form RNA
- CYANA macro file indicating the ranges of nucleotides involved in regular Watson-Crick base-pairs.
Availability
- Chess2FLYA is freely available.
