COFIMA
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With COFIMA you can easily: | With COFIMA you can easily: | ||
| − | *Convert between different data file formats | + | * Convert between different data file formats |
| − | *Rename atoms, residues and dihedral angles | + | * Rename atoms, residues and dihedral angles |
| − | *Delete atoms, distance or angle constraints | + | * Delete atoms, distance or angle constraints |
| − | *List specific atoms, distance or angle constraints | + | * List specific atoms, distance or angle constraints |
| − | *Measure distances and dihedral angles | + | * Measure distances and dihedral angles |
| − | *Attach atoms (e.g. hydrogens) | + | * Attach atoms (e.g. hydrogens) |
| − | *Insert pseudo atoms or pseudo atom constraints | + | * Insert pseudo atoms or pseudo atom constraints |
| − | *Generate covalent connectivities | + | * Generate covalent connectivities |
| − | *Sort atoms, distance or angle constraints | + | * Sort atoms, distance or angle constraints |
| − | + | ||
== Availability == | == Availability == | ||
| − | *COFIMA is [[COFIMA 2. | + | * COFIMA is [[COFIMA 2.2 Software License|available]] free-of-charge. The current version is COFIMA 2.2. |
| − | *[[Media: | + | |
| + | == Documentation == | ||
| + | |||
| + | * [[Media:CofimaManual.pdf|Manual (PDF)]] | ||
Latest revision as of 06:56, 28 June 2011
Coordinate and constraint file manipulation
COFIMA (© by Peter Güntert) is a versatile program for interactive manipulations on Cartesian coordinate, distance constraint and dihedral angle constraint files.
With COFIMA you can easily:
- Convert between different data file formats
- Rename atoms, residues and dihedral angles
- Delete atoms, distance or angle constraints
- List specific atoms, distance or angle constraints
- Measure distances and dihedral angles
- Attach atoms (e.g. hydrogens)
- Insert pseudo atoms or pseudo atom constraints
- Generate covalent connectivities
- Sort atoms, distance or angle constraints
Availability
- COFIMA is available free-of-charge. The current version is COFIMA 2.2.
