Protein structures

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Revision as of 10:57, 6 February 2009

NMR protein structures co-authored by P. Güntert.

	He, F., Dang, W., Abe, C., Tsuda, K., Inoue, M., Watanabe, S., Kobayashi, N., Kigawa, T, Matsuda, T., Yabuki, T., Aoki, M., Seki, E., Harada, T., Tomabechi, Y., Terada, T., Shirouzu, M., Tanaka, A., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the RNA binding domain in the human muscleblind-like protein 2. Protein Sci. 18, 80-91 (2009) PDB 2E5S
	Ohnishi, S. Pääkkönen, K., Koshiba, S., Tochio, N., Sato, M., Kobayashi, N., Harada, T., Watanabe, S., Muto, Y., Güntert, P., Tanaka, A., Kigawa, T. & Yokoyama, S. Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions. Proteins 74, 133–144 (2009) PDB 2E29
	Takeda, M., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A. M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Jee, J., Güntert, P., Aceti, D. J., Markley, J. L. & Kainosho, M. Structure of the putative 32 kDa myrosinase binding protein from Arabidopsis (At3g16450.1) as determined by the SAIL-NMR method. FEBS J. 275, 5873–5884 (2008) PDB 2JZ4 NMR restraints BMRB 15607
	Yoshida, H., Furuya, N., Lin, Y. J., Güntert, P., Komano, T. & Kainosho, M. Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation. J. Mol. Biol. 384, 690–701 (2008) PDB 2BA3 BMRB 15784
	Lin, Y. J., Umehara, T., Inoue, M., Saito, K., Kigawa, T., Jang, M. K., Ozato, K., Yokoyama, S., Padmanabhan, B., Güntert, P. Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4. Protein Sci. 17, 2174–2179 (2008) PDB 2JNS BMRB 15125
	Koglin, A., Löhr, F., Bernhard, F., Rogov, V. R., Frueh, D. P., Strieter, E. R., Mofid, M. R., Güntert, P., Wagner, G., Walsh, C. T., Marahiel, M. A. & Dötsch, V. Structural basis for the selectivity of the external thioesterase of the surfactin-synthetase. Nature 454, 907–911 (2008) PDB 2RON NMR restraints (SrfTEII) PDB 2K2Q (complex of SrfTEII and H state TycC3–PCP)
	Nagata, T., Suzuki, S., Endo, R., Shirouzu, M., Terada, T., Inoue, M., Kigawa, T, Güntert, P., Hayashizaki, Y., Muto, Y. & Yokoyama, S. The RRM domain of poly(A)-specific ribonuclease (PARN) has a non-canonical binding site for mRNA cap analog recognition. Nucl. Acids Res. 36, 4754–4767 (2008) PDB 1WHV (free form) PDB 2ROK (cap-bound form)
	Takeda, M., Chang, C. K., Ikeya, T., Güntert, P., Chang, Y. H., Hsu, Y. L., Huang, T. H. & Kainosho, M. Solution structure of the C-terminal dimerization domain of SARS coronavirus nucleocapsid protein determined by the SAIL-NMR method. J. Mol. Biol. 380, 608–622 (2008) PDB 2JW8 BMRB 15511
	Kuwasako, K., Takahashi, M., Tochio, N., Abe, C., Tsuda, K., Inoue, M., Terada, T., Shirouzu, M., Kobayashi, N., Kigawa, T., Taguchi, S., Tanaka, A., Hayashizaki, Y., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode. Biochemistry 47, 6437–6450 (2008) PDB 2RNE
	KKuwasako, K., Dohmae, N., Inoue, M., Shirouzu, M., Taguchi, S., Güntert, P., Séraphin, B., Muto, Y. & Yokoyama, S. Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses. Proteins 71, 1617–1636 (2008) PDB 2FHO NMR restraints
	Hwang, E., Ryu, K. S., Pääkkönen, K., Güntert, P., Cheong, H. K., Lim, D. S., Lee, J. O., Jeon, Y. H. & Cheong, C. Structural insight into dimeric interaction of the SARAH domains from Mst1 and RASSF family proteins in the apoptosis pathway. Proc. Natl. Acad. Sci. USA. 104, 9236–9241 (2007) PDB 2JO8 NMR restraints
	Ohnishi, S. Güntert, P., Koshiba, S., Tomizawa, T., Akasaka, R., Tochio, N., Sato, M., Inoue, M., Harada, T., Watanabe, S., Tanaka, T., Shirouzu, M., Kigawa, T. & Yokoyama, S. Solution structure of an atypical WW domain in a novel β-clam-like dimeric form. FEBS Lett. 581, 462–468 (2007) PDB 2DWV
	Kuwasako, K., He, F., Inoue, M., Tanaka, A., Sugano, S., Güntert, P., Muto, Y. & Yokoyama, S. Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP. Structure 14, 1677–1689 (2006) PDB 2DT6 (SURP1) PDB 2DT7 (SURP2-SF3a60)
	ENTH-VHS domain At3g16270(9-135) from Arabidopsis thaliana. López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112–13122 (2006) PDB 2DCP NMR restraints Note: Automated structure determination with FLYA. Structure does not supersede the original deposition 1VDY.
	Rhodanese homology domain At3g16270(175-295) from Arabidopsis thaliana. López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112–13122 (2006) PDB 2DCQ NMR restraints Note: Automated structure determination with FLYA. Structure does not supersede the original deposition 1VEE.
	Src homology domain 2 from the human feline sarcoma oncogene Fes. López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112–13122 (2006) PDB 2DCR NMR restraints Note: Automated structure determination with FLYA. Structure does not supersede the original deposition 1WQU.
	Jurt, S., Aemissegger, A., Güntert, P., Zerbe, O. & Hilvert, D. A photoswitchable miniprotein based on the sequence of avian pancreatic polypeptide. Angew. Chem. Int. Ed. 45, 6297-6300 (2006) PDB 2H4B NMR restraints (cis-1-PP) PDB 2H3S NMR restraints (cis-1-PP bound to DPC micelles) PDB 2H3T NMR restraints (trans-1-PP bound to DPC micelles)
	Hamada, T., Ito, Y., Abe, T., Hayashi, F., Güntert, P., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yoshida, M., Tanaka, A., Sugano, S., Yokoyama, S. & Hirota, H. Solution structure of the antifreeze-like domain of human sialic acid synthase. Protein Sci. 15, 1010–1016 (2006) PDB 1WVO NMR restraints
	Aachmann, F. L., Svanem, B. I. G., Güntert, P., Petersen, S. B., Valla, S. & Wimmer, R. NMR structure of the R-module - A parallel β-roll subunit from an Azotobacter vinelandii mannuronan C-5 epimerase. J. Biol. Chem. 281, 7350–7356 (2006) PDB 2AGM NMR restraints
	Stereo-array isotope labeled (SAIL) maltodextrin-binding protein MBP. Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labeling for NMR protein structure determinations. Nature 440, 52–57 (2006) PDB 2D21 BMRB 6807
	Stereo-array isotope labeled (SAIL) calmodulin. Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labeling for NMR protein structure determinations. Nature 440, 52–57 (2006) PDB 1X02 BMRB 6541
	Li, H., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Nunokawa, E., Motoda, Y., Kobayashi, A., Terada, T., Shirouzu, M., Koshiba, S., Lin, Y. J., Güntert, P., Suzuki, H., Hayashizaki, Y., Kigawa, T. & Yokoyama, S. Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold. J. Biomol. NMR 32, 329-334 (2005). PDB 1WWQ
	Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes. J. Biomol. NMR 31, 357-361 (2005). PDB 1WQU BMRB 6331
	Nameki, N., Tochio, N., Koshiba, S., Tochio, N., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Saito, M., Ikari, M., Watanabe, M., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Tanaka, A., Hayashizaki, Y., Güntert, P., Kigawa, T. & Yokoyama, S. Solution structure of the PWWP domain of the hepatoma-derived growth factor family. Prot. Sci. 14, 756-764 (2005). PDB 1N27
	Calzolai, L., Lysek, D. A., Pérez, D. R., Güntert, P. & Wüthrich, K. Prion protein NMR structures of chicken, turtle and frog. Proc. Natl. Acad. Sci. USA 102, 651-655 (2005). PDB 1U3M NMR restraints BMRB 6269 (chicken PrP(121-225)) PDB 1U5L NMR restraints BMRB 6270 (turtle PrP(121-225)) PDB 1XU0 NMR restraints BMRB 6282 (frog PrP(90-222))
	Lysek, D. A., Schorn, C., Nivon, L. G., Esteve-Moya, V., Christen, B., Calzolai, L., von Schroetter, C., Fiorito, F., Herrmann, T., Güntert, P. & Wüthrich, K. Prion protein NMR structures of cat, dog, pig and sheep. Proc. Natl. Acad. Sci. USA 102, 640-645 (2005). PDB 1XYJ NMR restraints BMRB 6377 (cat PrP(121-231)) PDB 1XYK NMR restraints BMRB 6378 (dog PrP(121-231)) PDB 1XYQ NMR restraints BMRB 6380 (pig PrP(121-231)) PDB 1XYU NMR restraints BMRB 6381 (sheep PrP[R168](121-231)) PDB 1Y2S NMR restraints BMRB 6403 (sheep PrP[H168](121-231))
	Pääkkönen, K., Tossavainen, H., Permi, P., Rakkolainen, H., Rauvala, H., Raulo, E., Kilpeläinen, I. & Güntert, P. Solution structures of the first and fourth TSR domains of F-spondin. Proteins 64, 665-672 (2006). PDB 1SZL (TSR1) PDB 1VEX (TSR4)
	ENTH-VHS domain At3g16270 from Arabidopsis thaliana. PDB 1VDY BMRB 5928
	Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. NMR solution structure of the monomeric form of the bacteriophage λ capsid stabilizing protein gpD. J. Biomol. NMR 31, 351-356 (2005). PDB 1VD0 BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=4936 4936
	Pantoja-Uceda, D., López-Méndez, B., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana. Prot. Sci. 14, 224-230 (2005). PDB 1VEE BMRB 5929
	Nameki, N., Yoneyama, M., Koshiba, S., Tochio, N., Inoue, M., Seki, E., Matsuda, T., Tomo, Y., Harada, T., Saito, K., Kobayashi, N., Yabuki, T., Aoki, M., Nunokawa, E., Matsuda, N., Sakagami, N., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Osanai, T., Tanaka, A., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kinoshita, K., Güntert, P., Kigawa, T. & Yokoyama, S. Solution structure of the RWD domain of the mouse GCN2 protein. Prot. Sci. 13, 2089-2100 (2004). PDB 1UKX
	Fernández, C., Hilty, C., Wider, G., Güntert, P. & Wüthrich, K. NMR Structure of the integral membrane protein OmpX. J. Mol. Biol. 336, 1211-1221 (2004). PDB 1Q9G BMRB 4936
	FHA domain of mouse afadin 6. PDB 1WLN
	Vanwetswinkel, S., Kriek, J., Andersen, G. R., Güntert, P., Dijk, J., Canters, G. W. & Siegal, G. Solution structure of the 162 residue C-terminal domain of the human elongation factor 1Bγ. J. Biol. Chem. 278, 43443-43451 (2003). PDB 1PBU NMR restraints BMRB 5628
	Hilge, M., Siegal, G., Vuister, G. W., Güntert, P., Gloor, S. M. & Abrahams, J. P. ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase. Nat. Struct. Biol. 10, 468-474 (2003). PDB 1MO7 BMRB 5577 (free form) PDB 1MO8 BMRB 5576 (ATP-bound form)
	Lührs, T., Riek, R., Güntert, P. & Wüthrich, K. NMR structure of the human doppel protein. J. Mol. Biol. 326, 1549-1557 (2003). PDB 1LG4 NMR restraints BMRB 5145
	Zahn, R., Güntert, P., von Schroetter, C. & Wüthrich, K. NMR structure of a human prion protein with two disulfide bridges. J. Mol. Biol. 326, 225-234 (2003). PDB 1H0L NMR restraints BMRB 5378
	Enggist, E., Thöny-Meyer, L., Güntert, P. & Pervushin, K. NMR structure of the heme chaperone CcmE reveals a novel functional motif. Structure 10, 1551-1557 (2002). PDB 1SR3 NMR restraints
	Lee, D., Damberger, F. D., Peng, G., Horst, R., Güntert, P., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH. FEBS Lett. 531, 314-318 (2002). PDB 1LS8
	Ellgaard, L., Bettendorff, P., Braun, D., Herrmann, T., Fiorito, F., Jelesarov, I., Herrmann, T., Güntert, P., Helenius, A. & Wüthrich, K. NMR structures of 36 and 73-residue fragments of the calreticulin P-domain. J. Mol. Biol. 322, 773-784 (2002). PDB 1K9C NMR restraints (residues 189-261) 1K91 (residues 221-256) BMRB 5204 (residues 189-261) 5205 (residues 221-256)
	Miura, T., Klaus, W., Ross, A., Güntert, P. & Senn, H. The NMR structure of the class I human ubiquitin-conjugating enzyme 2b. J. Biomol. NMR 22, 89-92 (2002). PDB 1JAS NMR restraints BMRB 5038
	Horst, R., Damberger, F., Luginbühl, P., Güntert, P., Peng, G., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure reveals intramolecular regulation mechanism for pheromone binding and release. Proc. Natl. Acad. Sci. USA 98, 14374-14379 (2001). PDB 1GM0 NMR restraints BMRB 4849
	Ellgaard, L., Riek, R., Herrmann, T., Güntert, P., Braun, D., Helenius, A. & Wüthrich, K. NMR structure of the calreticulin P-domain. Proc. Natl. Acad. Sci. USA 98, 3133-3138 (2001). PDB 1HHN BMRB 4878
	Calzolai, L., Lysek, D. A., Güntert, P., von Schroetter, C., Riek, R., Zahn, R. & Wüthrich, K. NMR structures of three single-residue variants of the human prion protein. Proc. Natl. Acad. Sci. USA 97, 8340-8345 (2000). PDB 1E1G NMR restraints (variant M166V) 1E1P NMR restraints (variant S170N) 1E1U NMR restraints (variant R220K) BMRB 4736 (variant M166V) 4620 (variant R220K)
	Riek, R., Prêcheur, P., Wang, Y., Mackay, E. A., Wider, G., Güntert, P., Liu, A., Kägi, J. H. R. & Wüthrich, K. NMR structure of the sea urchin (Strongylocentrotus purpuratus) metallothionein MTA. J. Mol. Biol. 291, 417-428 (1999). PDB 1QJK NMR restraints (alpha domain) 1QJL NMR restraints (beta domain) BMRB 4363
	Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. The NMR solution structure of the periplasmic chaperone FimC. Nature Struct. Biol. 5, 885-890 (1998). PDB 1BF8 BMRB 4070
	Ottiger, M., Zerbe, O., Güntert, P. & Wüthrich, K. The NMR solution conformation of unligated human cyclophilin A. J. Mol. Biol. 272, 64-81 (1997). PDB 1OCA NMR restraints
	Antuch, W., Güntert, P. & Wüthrich, K. Ancestral beta gamma-crystallin precursor structure in a yeast killer toxin, Nature Struct. Biol. 3, 662-665 (1996). PDB 1WKT NMR restraints BMRB 5255
	Antuch, W., Güntert, P., Billeter, M., Hawthorne, T., Grossenbacher, H. & Wüthrich, K. NMR solution structure of the recombinant tick anticoagulant protein (rTAP), a factor Xa inhibitor from the tick Ornithodoros moubata. FEBS Lett. 352, 251-257 (1994). PDB 1TAP
	Berndt, K. D., Güntert, P. & Wüthrich, K. The NMR solution structure of dendrotoxin K from the venom of Dendroaspis polylepis polylepis. J. Mol. Biol. 234, 735-750 (1993). PDB 1DTK NMR restraints
	Szyperski, T., Güntert, P., Stone, S. R. & Wüthrich, K. The NMR solution structure of hirudin(1-51) and comparison with corresponding three-dimensional structures determined using the complete 65-residue hirudin polypeptide chain. J. Mol. Biol. 228, 1193-1205 (1992). PDB 1HIC NMR restraints
	Berndt, K. D., Güntert, P., Orbons, L. P. M. & Wüthrich, K. Determination of a high-quality NMR solution structure of the bovine pancreatic trypsin inhibitor (BPTI) and comparison with three crystal structures. J. Mol. Biol. 227, 757-775 (1992). PDB 1PIT NMR restraints
	Güntert, P., Qian, Y. Q., Otting, G., Müller, M., Gehring, W. J. & Wüthrich K. Structure determination of the Antp(C39->S) homeodomain from nuclear magnetic resonance data in solution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 531-540 (1991). PDB 2HOA

@@ Line 9: / Line 9: @@
 |[[image:2e29_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2E29]]
-|Ohnishi, S. Pääkkönen, K., Koshiba, S., Tochio, N., Sato, M., Kobayashi, N., Harada, T., Watanabe, S., Muto, Y., Güntert, P., Tanaka, A., Kigawa, T. & Yokoyama, S. Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions. [http://dx.doi.org/10.1002/prot.22138 Proteins 74, 133–144 (2009)]
+|Ohnishi, S. Pääkkönen, K., Koshiba, S., Tochio, N., Sato, M., Kobayashi, N., Harada, T., Watanabe, S., Muto, Y., Güntert, P., Tanaka, A., Kigawa, T. & Yokoyama, S. Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Ohnishi09-GUCTDomainStructure.pdf .] [http://dx.doi.org/10.1002/prot.22138 Proteins 74, 133–144 (2009)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2E29 2E29]'''
@@ Line 15: / Line 15: @@
 |[[image:2jz4_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2JZ4]]
-|Takeda, M., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A. M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Güntert, P., Aceti, D. J., Markley, J. L. & Kainosho, M. Structure of the putative 32 kDa myrosinase binding protein from Arabidopsis (At3g16450.1) as determined by the SAIL-NMR method. [http://dx.doi.org/10.1111/j.1742-4658.2008.06717.x FEBS J. 275, 5873–5884 (2008)]
+|Takeda, M., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A. M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Jee, J., Güntert, P., Aceti, D. J., Markley, J. L. & Kainosho, M. Structure of the putative 32 kDa myrosinase binding protein from Arabidopsis (At3g16450.1) as determined by the SAIL-NMR method[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Takeda08-At3g16450SAIL.pdf .] [http://dx.doi.org/10.1111/j.1742-4658.2008.06717.x FEBS J. 275, 5873–5884 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2JZ4 2JZ4]''' [http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=NMR&compression=NO&structureId=2JZ4 NMR restraints] '''BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=15607 15607]'''
@@ Line 21: / Line 21: @@
 |[[image:2ba3_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2BA3]]
-|Yoshida, H., Furuya, N., Lin, Y. J., Güntert, P., Komano, T. & Kainosho, M. Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation. [http://dx.doi.org/10.1016/j.jmb.2008.09.067 J. Mol. Biol. 384, 690–701 (2008)]
+|Yoshida, H., Furuya, N., Lin, Y. J., Güntert, P., Komano, T. & Kainosho, M. Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Yoshida08-NikADimerStructure.pdf .] [http://dx.doi.org/10.1016/j.jmb.2008.09.067 J. Mol. Biol. 384, 690–701 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2BA3 2BA3]''' '''BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=15784 15784]'''
@@ Line 27: / Line 27: @@
 |[[image:2jns_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2JNS]]
-|Lin, Y. J., Umehara, T., Inoue, M., Saito, K., Kigawa, T., Jang, M. K., Ozato, K., Yokoyama, S., Padmanabhan, B., Güntert, P. Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4. [http://dx.doi.org/10.1110/ps.037580.108 Protein Sci. 17, 2174–2179 (2008)]
+|Lin, Y. J., Umehara, T., Inoue, M., Saito, K., Kigawa, T., Jang, M. K., Ozato, K., Yokoyama, S., Padmanabhan, B., Güntert, P. Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Lin08-Brd4ET.pdf .] [http://dx.doi.org/10.1110/ps.037580.108 Protein Sci. 17, 2174–2179 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2JNS 2JNS]''' '''BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=15125 15125]'''
@@ Line 33: / Line 33: @@
 |[[image:2ron_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2RON]]
-|Koglin, A., Löhr, F., Bernhard, F., Rogov, V. R., Frueh, D. P., Strieter, E. R., Mofid, M. R., Güntert, P., Wagner, G., Walsh, C. T., Marahiel, M. A. & Dötsch, V. Structural basis for the selectivity of the external thioesterase of the surfactin-synthetase. [http://dx.doi.org/10.1038/nature07161 Nature 454, 907–911 (2008)]
+|Koglin, A., Löhr, F., Bernhard, F., Rogov, V. R., Frueh, D. P., Strieter, E. R., Mofid, M. R., Güntert, P., Wagner, G., Walsh, C. T., Marahiel, M. A. & Dötsch, V. Structural basis for the selectivity of the external thioesterase of the surfactin-synthetase[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Koglin08-SurfactinSynthetase.pdf .] [http://dx.doi.org/10.1038/nature07161 Nature 454, 907–911 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2RON 2RON]''' [http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=NMR&compression=NO&structureId=2RON NMR restraints] (SrfTEII)<br>'''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2K2Q 2K2Q]''' (complex of SrfTEII and H state TycC3–PCP)
@@ Line 39: / Line 39: @@
 |[[image:1whv_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2RNE]]
-|Nagata, T., Suzuki, S., Endo, R., Shirouzu, M., Terada, T., Inoue, M., Kigawa, T, Güntert, P., Hayashizaki, Y., Muto, Y. & Yokoyama, S. The RRM domain of poly(A)-specific ribonuclease (PARN) has a non-canonical binding site for mRNA cap analog recognition. [http://dx.doi.org/10.1093/nar/gkn458 Nucl. Acids Res. 36, 4754–4767 (2008)]
+|Nagata, T., Suzuki, S., Endo, R., Shirouzu, M., Terada, T., Inoue, M., Kigawa, T, Güntert, P., Hayashizaki, Y., Muto, Y. & Yokoyama, S. The RRM domain of poly(A)-specific ribonuclease (PARN) has a non-canonical binding site for mRNA cap analog recognition[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Nagata08-RRM.pdf .] [http://dx.doi.org/10.1093/nar/gkn458 Nucl. Acids Res. 36, 4754–4767 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=1WHV 1WHV]''' (free form)<br>
@@ Line 46: / Line 46: @@
 |[[image:2jw8_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2JO8]]
-|Takeda, M., Chang, C. K., Ikeya, T., Güntert, P., Chang, Y. H., Hsu, Y. L., Huang, T. H. & Kainosho, M. Solution structure of the C-terminal dimerization domain of SARS coronavirus nucleocapsid protein determined by the SAIL-NMR method. [http://dx.doi.org/10.1016/j.jmb.2007.11.093 J. Mol. Biol. 380, 608–622 (2008)]
+|Takeda, M., Chang, C. K., Ikeya, T., Güntert, P., Chang, Y. H., Hsu, Y. L., Huang, T. H. & Kainosho, M. Solution structure of the C-terminal dimerization domain of SARS coronavirus nucleocapsid protein determined by the SAIL-NMR method[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Takeda08-SARS.pdf .] [http://dx.doi.org/10.1016/j.jmb.2007.11.093 J. Mol. Biol. 380, 608–622 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2JW8 2JW8]''' '''BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=15511 15511]'''
@@ Line 52: / Line 52: @@
 |[[image:2rne_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2RNE]]
-|Kuwasako, K., Takahashi, M., Tochio, N., Abe, C., Tsuda, K., Inoue, M., Terada, T., Shirouzu, M., Kobayashi, N., Kigawa, T., Taguchi, S., Tanaka, A., Hayashizaki, Y., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode. [http://dx.doi.org/10.1021/bi7024723 Biochemistry 47, 6437–6450 (2008)]
+|Kuwasako, K., Takahashi, M., Tochio, N., Abe, C., Tsuda, K., Inoue, M., Terada, T., Shirouzu, M., Kobayashi, N., Kigawa, T., Taguchi, S., Tanaka, A., Hayashizaki, Y., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Kuwasako08-TIA1RRMDomain.pdf .] [http://dx.doi.org/10.1021/bi7024723 Biochemistry 47, 6437–6450 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2RNE 2RNE]'''
@@ Line 58: / Line 58: @@
 |[[image:2fho asym r 250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2FHO]]
-|Kuwasako, K., Dohmae, N., Inoue, M., Shirouzu, M., Taguchi, S., Güntert, P., Séraphin, B., Muto, Y. & Yokoyama, S. Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses. [http://dx.doi.org/10.1002/prot.21839 Proteins 71, 1617–1636 (2008)]
+|KKuwasako, K., Dohmae, N., Inoue, M., Shirouzu, M., Taguchi, S., Güntert, P., Séraphin, B., Muto, Y. & Yokoyama, S. Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Kuwasako08-p14SF3b155Structure.pdf .] [http://dx.doi.org/10.1002/prot.21839 Proteins 71, 1617–1636 (2008)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2FHO 2FHO]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2fho.mr.Z NMR restraints]
 |-
 |[[image:2jo8_asym_r_250.jpg‎|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2JO8]]
-|Hwang, E., Ryu, K. S., Pääkkönen, K., Güntert, P., Cheong, H. K., Lim, D. S., Lee, J. O., Jeon, Y. H. & Cheong, C. Structural insight into dimeric interaction of the SARAH domains from Mst1 and RASSF family proteins in the apoptosis pathway. [http://dx.doi.org/10.1073/pnas.0610716104 Proc. Natl. Acad. Sci. USA. 104, 9236–9241 (2007)]
+|Hwang, E., Ryu, K. S., Pääkkönen, K., Güntert, P., Cheong, H. K., Lim, D. S., Lee, J. O., Jeon, Y. H. & Cheong, C. Structural insight into dimeric interaction of the SARAH domains from Mst1 and RASSF family proteins in the apoptosis pathway[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Hwang07-DimericSARAHDomains.pdf .] [http://dx.doi.org/10.1073/pnas.0610716104 Proc. Natl. Acad. Sci. USA. 104, 9236–9241 (2007)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2JO8 2JO8]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2dcp.mr.Z NMR restraints]
@@ Line 71: / Line 70: @@
 |[[image:2dwv asym r 250.jpg|120px|link=http://www.rcsb.org/pdb/explore.do?structureId=2DWV]]
-|Ohnishi, S. Güntert, P., Koshiba, S., Tomizawa, T., Akasaka, R., Tochio, N., Sato, M., Inoue, M., Harada, T., Watanabe, S., Tanaka, T., Shirouzu, M., Kigawa, T. & Yokoyama, S. Solution structure of an atypical WW domain in a novel β-clam-like dimeric form. [http://dx.doi.org/10.1016/j.febslet.2007.01.008 FEBS Lett. 581, 462–468 (2007)]
+|Ohnishi, S. Güntert, P., Koshiba, S., Tomizawa, T., Akasaka, R., Tochio, N., Sato, M., Inoue, M., Harada, T., Watanabe, S., Tanaka, T., Shirouzu, M., Kigawa, T. & Yokoyama, S. Solution structure of an atypical WW domain in a novel β-clam-like dimeric form[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Ohnishi07-WWDimer.pdf .] [http://dx.doi.org/10.1016/j.febslet.2007.01.008 FEBS Lett. 581, 462–468 (2007)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2DWV 2DWV]'''
@@ Line 77: / Line 76: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|Kuwasako, K., He, F., Inoue, M., Tanaka, A., Sugano, S., Güntert, P., Muto, Y. & Yokoyama, S. Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP. Structure 14, 1677-1689 (2006).
+|Kuwasako, K., He, F., Inoue, M., Tanaka, A., Sugano, S., Güntert, P., Muto, Y. & Yokoyama, S. Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Kuwasako06-SURPDomain.pdf .] [http://dx.doi.org/10.1016/j.str.2006.09.009 Structure 14, 1677–1689 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2DT6 2DT6]''' (SURP1)<br>'''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2DT7 2DT7]''' (SURP2-SF3a60)
@@ Line 83: / Line 82: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|ENTH-VHS domain At3g16270(9-135) from ''Arabidopsis thaliana''.<br>López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112-13122 (2006).
+|ENTH-VHS domain At3g16270(9-135) from ''Arabidopsis thaliana''.<br>López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Lopez06a.pdf .] [http://dx.doi.org/10.1021/ja061136l J. Am. Chem. Soc. 128, 13112–13122 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2DCP 2DCP]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2dcp.mr.Z NMR restraints]
@@ Line 91: / Line 90: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|Rhodanese homology domain At3g16270(175-295) from ''Arabidopsis thaliana''.
+|Rhodanese homology domain At3g16270(175-295) from ''Arabidopsis thaliana''.<br>López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Lopez06a.pdf .] [http://dx.doi.org/10.1021/ja061136l J. Am. Chem. Soc. 128, 13112–13122 (2006)]
-López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112-13122 (2006).
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2DCQ 2DCQ]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2dcq.mr.Z NMR restraints]
@@ Line 100: / Line 98: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|Src homology domain 2 from the human feline sarcoma oncogene Fes.
+|Src homology domain 2 from the human feline sarcoma oncogene Fes.<br>López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Lopez06a.pdf .] [http://dx.doi.org/10.1021/ja061136l J. Am. Chem. Soc. 128, 13112–13122 (2006)]
-López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112-13122 (2006).
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2DCR 2DCR]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2dcr.mr.Z NMR restraints]<br>Note: Automated structure determination with FLYA. Structure does not supersede the original deposition 1WQU.
@@ Line 107: / Line 104: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|Jurt, S., Aemissegger, A., Güntert, P., Zerbe, O. & Hilvert, D. A photoswitchable miniprotein based on the sequence of avian pancreatic polypeptide. Angew. Chem. Int. Ed. 45, 6297-6300 (2006).
+|Jurt, S., Aemissegger, A., Güntert, P., Zerbe, O. & Hilvert, D. A photoswitchable miniprotein based on the sequence of avian pancreatic polypeptide[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Jurt06a.pdf .] [http://dx.doi.org/10.1002/anie.200602084 Angew. Chem. Int. Ed. 45, 6297-6300 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2H4B 2H4B]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2h4b.mr.Z NMR restraints] (cis-1-PP)<br>'''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2H3S 2H3S]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2h3s.mr.Z NMR restraints] (cis-1-PP bound to DPC micelles)<br>'''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2H3T 2H3T]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2h3t.mr.Z NMR restraints] (trans-1-PP bound to DPC micelles)
@@ Line 113: / Line 110: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|Hamada, T., Ito, Y., Abe, T., Hayashi, F., Güntert, P., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yoshida, M., Tanaka, A., Sugano, S., Yokoyama, S. & Hirota, H. Solution structure of the antifreeze-like domain of human sialic acid synthase. Protein Sci. 15, 1010-1016 (2006).
+|Hamada, T., Ito, Y., Abe, T., Hayashi, F., Güntert, P., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yoshida, M., Tanaka, A., Sugano, S., Yokoyama, S. & Hirota, H. Solution structure of the antifreeze-like domain of human sialic acid synthase[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Hamada06a.pdf .] [http://dx.doi.org/10.1110/ps.051700406 Protein Sci. 15, 1010–1016 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=1WVO 1WVO]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/1wvo.mr.Z NMR restraints]
@@ Line 119: / Line 116: @@
 |[[image:2dwv asym r 250.jpg|120px]]
-|Aachmann, F. L., Svanem, B. I. G., Güntert, P., Petersen, S. B., Valla, S. & Wimmer, R. NMR structure of the R-module - A parallel β-roll subunit from an Azotobacter vinelandii mannuronan C-5 epimerase. J. Biol. Chem. 281, 7350-7356 (2006).
+|Aachmann, F. L., Svanem, B. I. G., Güntert, P., Petersen, S. B., Valla, S. & Wimmer, R. NMR structure of the R-module - A parallel β-roll subunit from an ''Azotobacter vinelandii'' mannuronan C-5 epimerase[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Aachmann06a.pdf .] [http://dx.doi.org/10.1074/jbc.M510069200 J. Biol. Chem. 281, 7350–7356 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2AGM 2AGM]''' [ftp://ftp.rcsb.org/pub/pdb/data/structures/all/nmr_restraints/2agm.mr.Z NMR restraints]
@@ Line 126: / Line 123: @@
 |[[image:2dwv asym r 250.jpg|120px]]
 |Stereo-array isotope labeled (SAIL) maltodextrin-binding protein MBP.
-Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labelling for NMR protein structure determinations. Nature 440, 52-57 (2006).
+Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labeling for NMR protein structure determinations[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Kainosho06a.pdf .] [http://dx.doi.org/10.1038/nature04525 Nature 440, 52–57 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=2D21 2D21]''' '''BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=6807 6807]'''
@@ Line 133: / Line 130: @@
 |[[image:2dwv asym r 250.jpg|120px]]
 |Stereo-array isotope labeled (SAIL) calmodulin.
-Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labelling for NMR protein structure determinations. Nature 440, 52-27 (2006).
+Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labeling for NMR protein structure determinations[http://www.bpc.uni-frankfurt.de/guentert/Intranet/Reprints/Kainosho06a.pdf .] [http://dx.doi.org/10.1038/nature04525 Nature 440, 52–57 (2006)]
 '''PDB [http://www.rcsb.org/pdb/explore.do?structureId=1X02 1X02]''' '''BMRB [http://www.bmrb.wisc.edu./data_library/generate_summary.php?bmrbId=6541 6541]'''

Protein structures

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Protein structures

Revision as of 10:57, 6 February 2009

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